Installation

The openNucleome library can be installed via pip.

Install via pip

The code below will install openNucleome from PyPI.

pip install opennucleome

The openNucleome library uses OpenMM API to run the whole nucleus simulations. These requirements can be met by installing the OpenMM package from the conda-forge channel:

conda install -c conda-forge openmm=7.5.1

The following are libraries required for installing openNucleome:

• Python (>=3.6)

• NumPy (>=1.19.5)

• SciPy (>=1.5.4)

• pandas (>=1.1.5)

• scikit-learn (>=0.24.2)

• MDAnalysis (>=2.0.0)

• mdtraj (>=1.9.7)

• OpenMM (>=7.5.1)